Motif J3_36023.1 Version J3_36023.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 1-11 | 2-3 | 4-8 | 9-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_3MOJ_001 | 3MOJ | 0.7026 | 0 | A | LSU rRNA | U | 2546 | A | 2547 | * | U | 2561 | U | 2562 | U | 2563 | A | 2564 | A | 2565 | A | 2566 | G | 2567 | * | C | 2517 | A | 2518 | cWW | ncWW | ncWW | |
| 2 | J3_1MFQ_002 | 1MFQ | 0.0000 | 1 | A | SRP RNA | U | 128 | C | 129 | * | G | 168 | C | 170 | U | 171 | A | 172 | A | 173 | G | 174 | G | 175 | * | C | 221 | G | 222 | cWW | ncWW | cWW | |
| 3 | J3_6VMY_001 | 6VMY | 0.3244 | 0 | A | Cobalamin riboswitch | U | 213 | G | 214 | * | C | 237 | U | 238 | U | 239 | A | 240 | A | 241 | A | 242 | A | 243 | * | U | 311 | G | 312 | cWW | cWW | tWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CA*UA*UUUAAAG | 1 |
| UC*GCCUAAGG*CG | 1 |
| UG*CUUAAAA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| **UUAAA | 1 |
| *CCUAAG* | 1 |
| *UUAAA* | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-cWW-F-F-F-F-F
- Heat map statistics
- Min 0.32 | Avg 0.39 | Max 0.71
Coloring options: