J3_3NPQ_002
3D structure
- PDB id
- 3NPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the S-adenosylhomocysteine riboswitch at 2.18 A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.18 Å
Loop
- Sequence
- CUGCAAG*CCCAG*CGG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3NPQ_002 not in the Motif Atlas
- Geometric match to J3_3NPQ_001
- Geometric discrepancy: 0.0003
- The information below is about J3_3NPQ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32030.1
- Basepair signature
- cWW-tWH-F-F-cWW-tHS-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
3NPQ|1|B|C|13
3NPQ|1|B|U|14
3NPQ|1|B|G|15
3NPQ|1|B|C|16
3NPQ|1|B|A|17
3NPQ|1|B|A|18
3NPQ|1|B|G|19
*
3NPQ|1|B|C|26
3NPQ|1|B|C|27
3NPQ|1|B|C|28
3NPQ|1|B|A|29
3NPQ|1|B|G|30
*
3NPQ|1|B|C|46
3NPQ|1|B|G|47
3NPQ|1|B|G|48
Current chains
- Chain B
- S-ADENOSYLHOMOCYSTEINE RIBOSWITCH
Nearby chains
- Chain A
- SAH (S-adenosyl-L-homocysteine) riboswitch aptamer
Coloring options: