3NPQ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3NPQ_001 | 1/A/20:25 | GNRA HL_37824.7 | ||
| HL_3NPQ_003 | 1/B/20:25 | GNRA | geometric HL_3NPQ_001 HL_37824.7 | |
| HL_3NPQ_005 | 1/C/20:25 | GNRA | geometric HL_3NPQ_001 HL_37824.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3NPQ_002 | No text annotation | ||
| HL_3NPQ_004 | No text annotation | ||
| HL_3NPQ_006 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3NPQ_004 | 1/A/7:16, 1/A/31:32 | No text annotation IL_18354.1 | ||
| IL_3NPQ_005 | 1/A/7:19, 1/A/26:32 | No text annotation IL_60448.1 | ||
| IL_3NPQ_006 | 1/A/16:19, 1/A/26:31 | No text annotation IL_96332.5 | ||
| IL_3NPQ_007 | 1/B/7:16, 1/B/31:32 | No text annotation | geometric IL_3NPQ_004 IL_18354.1 | |
| IL_3NPQ_008 | 1/B/7:19, 1/B/26:32 | No text annotation | geometric IL_3NPQ_005 IL_60448.1 | |
| IL_3NPQ_009 | 1/B/16:19, 1/B/26:31 | No text annotation | geometric IL_3NPQ_006 IL_96332.5 | |
| IL_3NPQ_010 | 1/C/7:16, 1/C/31:32 | No text annotation | geometric IL_3NPQ_004 IL_18354.1 | |
| IL_3NPQ_011 | 1/C/7:19, 1/C/26:32 | No text annotation | geometric IL_3NPQ_005 IL_60448.1 | |
| IL_3NPQ_012 | 1/C/16:19, 1/C/26:31 | No text annotation | geometric IL_3NPQ_006 IL_96332.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3NPQ_001 | Tandem non-canonical cWW pairs | ||
| IL_3NPQ_002 | Tandem non-canonical cWW pairs | ||
| IL_3NPQ_003 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3NPQ_001 | 1/A/13:19, 1/A/26:30, 1/A/46:48 | No text annotation J3_32030.1 | ||
| J3_3NPQ_002 | 1/B/13:19, 1/B/26:30, 1/B/46:48 | No text annotation | geometric J3_3NPQ_001 J3_32030.1 | |
| J3_3NPQ_003 | 1/C/13:19, 1/C/26:30, 1/C/46:48 | No text annotation | geometric J3_3NPQ_001 J3_32030.1 |
Problematic loops
No problematic loops
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