3D structure

PDB id
3OTO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)
Experimental method
X-RAY DIFFRACTION
Resolution
3.69 Å

Loop

Sequence
GCCUAAG*UAGGAAUCU*AGC
Length
19 nucleotides
Bulged bases
3OTO|1|A|C|48, 3OTO|1|A|A|50, 3OTO|1|A|A|51
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3OTO_014 not in the Motif Atlas
Homologous match to J3_4LFB_014
Geometric discrepancy: 0.0694
The information below is about J3_4LFB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

3OTO|1|A|G|46
3OTO|1|A|C|47
3OTO|1|A|C|48
3OTO|1|A|U|49
3OTO|1|A|A|50
3OTO|1|A|A|51
3OTO|1|A|G|52
*
3OTO|1|A|U|359
3OTO|1|A|A|360
3OTO|1|A|G|361
3OTO|1|A|G|362
3OTO|1|A|A|363
3OTO|1|A|A|364
3OTO|1|A|U|365
3OTO|1|A|C|366
3OTO|1|A|U|367
*
3OTO|1|A|A|393
3OTO|1|A|G|394
3OTO|1|A|C|395

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S RIBOSOMAL PROTEIN S12
Chain P
30S RIBOSOMAL PROTEIN S16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3261 s