J3_3OW2_010

3D structure

PDB id

3OW2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCACAG*CGUUC*GUUCG

Length

16 nucleotides

Bulged bases

3OW2|1|9|C|3012, 3OW2|1|9|C|3113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3OW2_010 not in the Motif Atlas

Homologous match to J3_4V9F_010

Geometric discrepancy: 0.0546

The information below is about J3_4V9F_010

Detailed Annotation

5S rRNA

Broad Annotation

No text annotation

Motif group

J3_89737.1

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3OW2|1|9|C|3009
3OW2|1|9|C|3010
3OW2|1|9|A|3011
3OW2|1|9|C|3012
3OW2|1|9|A|3013
3OW2|1|9|G|3014
*
3OW2|1|9|C|3067
3OW2|1|9|G|3068
3OW2|1|9|U|3069
3OW2|1|9|U|3070
3OW2|1|9|C|3071
*
3OW2|1|9|G|3110
3OW2|1|9|U|3111
3OW2|1|9|U|3112
3OW2|1|9|C|3113
3OW2|1|9|G|3114

Current chains

Chain 9

5S RIBOSOMAL RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain M

50S ribosomal protein L18P

Chain P

50S ribosomal protein L21e