J3_3OW2_013

3D structure

PDB id

3OW2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCGGUC*GGAAA*UG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3OW2_013 not in the Motif Atlas

Homologous match to J3_4V9F_016

Geometric discrepancy: 0.0665

The information below is about J3_4V9F_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

3OW2|1|0|C|1450
3OW2|1|0|C|1451
3OW2|1|0|G|1452
3OW2|1|0|G|1453
3OW2|1|0|U|1454
3OW2|1|0|C|1455
*
3OW2|1|0|G|1490
3OW2|1|0|G|1491
3OW2|1|0|A|1492
3OW2|1|0|A|1493
3OW2|1|0|A|1494
*
3OW2|1|0|U|1511
3OW2|1|0|G|1512

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S ribosomal protein L39e

Chain R

50S ribosomal protein L23P