J3_3OW2_016

3D structure

PDB id

3OW2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UG*CUGCAAAGUACC*GAGGCGAAAUAGAGCA

Length

30 nucleotides

Bulged bases

3OW2|1|0|U|510, 3OW2|1|0|G|514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3OW2_016 not in the Motif Atlas

Homologous match to J3_4V9F_012

Geometric discrepancy: 0.0688

The information below is about J3_4V9F_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24879.1

Basepair signature

cWW-cWW-cWS-tSH-F-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3OW2|1|0|U|27
3OW2|1|0|G|28
*
3OW2|1|0|C|480
3OW2|1|0|U|481
3OW2|1|0|G|482
3OW2|1|0|C|483
3OW2|1|0|A|484
3OW2|1|0|A|485
3OW2|1|0|A|486
3OW2|1|0|G|487
3OW2|1|0|U|488
3OW2|1|0|A|489
3OW2|1|0|C|490
3OW2|1|0|C|491
*
3OW2|1|0|G|501
3OW2|1|0|A|502
3OW2|1|0|G|503
3OW2|1|0|G|504
3OW2|1|0|C|505
3OW2|1|0|G|506
3OW2|1|0|A|507
3OW2|1|0|A|508
3OW2|1|0|A|509
3OW2|1|0|U|510
3OW2|1|0|A|511
3OW2|1|0|G|512
3OW2|1|0|A|513
3OW2|1|0|G|514
3OW2|1|0|C|515
3OW2|1|0|A|516

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S ribosomal protein L39e

Chain C

50S ribosomal protein L4P

Chain Q

50S ribosomal protein L22P

Chain S

50S ribosomal protein L24P