J3_3OX0_001
3D structure
- PDB id
- 3OX0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of glycine riboswitch, unbound state
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.05 Å
Loop
- Sequence
- GGAGAG*CG*CAAAAGGAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3OX0_001 not in the Motif Atlas
- Geometric match to J3_3OXE_001
- Geometric discrepancy: 0.0534
- The information below is about J3_3OXE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58957.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-F-F-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
3OX0|1|A|G|7
3OX0|1|A|G|8
3OX0|1|A|A|9
3OX0|1|A|G|10
3OX0|1|A|A|11
3OX0|1|A|G|12
*
3OX0|1|A|C|28
3OX0|1|A|G|29
*
3OX0|1|A|C|74
3OX0|1|A|A|75
3OX0|1|A|A|76
3OX0|1|A|A|77
3OX0|1|A|A|78
3OX0|1|A|G|79
3OX0|1|A|G|80
3OX0|1|A|A|81
3OX0|1|A|C|82
Current chains
- Chain A
- Domain II of glycine riboswitch
Nearby chains
- Chain B
- Domain II of glycine riboswitch
Coloring options: