J3_3OX0_001

3D structure

PDB id

3OX0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of glycine riboswitch, unbound state

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGAGAG*CG*CAAAAGGAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3OX0_001 not in the Motif Atlas

Geometric match to J3_3OXE_001

Geometric discrepancy: 0.0534

The information below is about J3_3OXE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58957.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-F-F-F-tHS-cWW

Number of instances in this motif group

1

Unit IDs

3OX0|1|A|G|7
3OX0|1|A|G|8
3OX0|1|A|A|9
3OX0|1|A|G|10
3OX0|1|A|A|11
3OX0|1|A|G|12
*
3OX0|1|A|C|28
3OX0|1|A|G|29
*
3OX0|1|A|C|74
3OX0|1|A|A|75
3OX0|1|A|A|76
3OX0|1|A|A|77
3OX0|1|A|A|78
3OX0|1|A|G|79
3OX0|1|A|G|80
3OX0|1|A|A|81
3OX0|1|A|C|82

Current chains

Chain A

Domain II of glycine riboswitch

Nearby chains

Chain B

Domain II of glycine riboswitch