J3_3OXJ_004

3D structure

PDB id

3OXJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

crystal structure of glycine riboswitch, soaked in Ba2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAGAG*CG*CAAAAGGAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3OXJ_004 not in the Motif Atlas

Geometric match to J3_3OXE_001

Geometric discrepancy: 0.0844

The information below is about J3_3OXE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58957.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-F-F-F-tHS-cWW

Number of instances in this motif group

1

Unit IDs

3OXJ|1|B|G|7||||4_555
3OXJ|1|B|G|8||||4_555
3OXJ|1|B|A|9||||4_555
3OXJ|1|B|G|10||||4_555
3OXJ|1|B|A|11||||4_555
3OXJ|1|B|G|12||||4_555
*
3OXJ|1|B|C|28||||4_555
3OXJ|1|B|G|29||||4_555
*
3OXJ|1|B|C|74||||4_555
3OXJ|1|B|A|75||||4_555
3OXJ|1|B|A|76||||4_555
3OXJ|1|B|A|77||||4_555
3OXJ|1|B|A|78||||4_555
3OXJ|1|B|G|79||||4_555
3OXJ|1|B|G|80||||4_555
3OXJ|1|B|A|81||||4_555
3OXJ|1|B|C|82||||4_555

Current chains

Chain B

domain II of glycine riboswitch

Nearby chains

Chain A

Glycine riboswitch