J3_3PDR_001

3D structure

PDB id

3PDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of manganese bound M-box RNA

Experimental method

X-RAY DIFFRACTION

Resolution

1.85 Å

Loop

Sequence

GAGAUACG*CUG*CUAUGC

Length

17 nucleotides

Bulged bases

3PDR|1|X|A|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

3PDR|1|X|G|43
3PDR|1|X|A|44
3PDR|1|X|G|45
3PDR|1|X|A|46
3PDR|1|X|U|47
3PDR|1|X|A|48
3PDR|1|X|C|49
3PDR|1|X|G|50
*
3PDR|1|X|C|124
3PDR|1|X|U|125
3PDR|1|X|G|126
*
3PDR|1|X|C|137
3PDR|1|X|U|138
3PDR|1|X|A|139
3PDR|1|X|U|140
3PDR|1|X|G|141
3PDR|1|X|C|142

Current chains

Chain X

M-box Riboswitch RNA

Nearby chains

Chain A

M-box riboswitch (ykoK leader)