3PDR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3PDR_004 | 1/A/68:73 | GNRA | homologous HL_3PDR_001 HL_34789.1 | |
| HL_3PDR_005 | 1/A/99:107 | No text annotation | homologous HL_3PDR_002 HL_51853.1 | |
| HL_3PDR_006 | 1/A/127:136 | No text annotation | homologous HL_3PDR_003 HL_35677.4 | |
| HL_3PDR_001 | 1/X/68:73 | GNRA HL_34789.1 | ||
| HL_3PDR_002 | 1/X/99:107 | No text annotation HL_51853.1 | ||
| HL_3PDR_003 | 1/X/127:136 | No text annotation HL_35677.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3PDR_006 | 1/A/21:22, 1/A/163:168 | No text annotation | homologous IL_3PDR_001 IL_29346.3 | |
| IL_3PDR_007 | 1/A/23:26, 1/A/159:162 | No text annotation | homologous IL_3PDR_002 IL_41344.1 | |
| IL_3PDR_008 | 1/A/28:31, 1/A/153:157 | Double sheared | homologous IL_3PDR_003 IL_03676.1 | |
| IL_3PDR_009 | 1/A/33:36, 1/A/149:151 | Major groove platform with extra cWW | homologous IL_3PDR_004 IL_36931.1 | |
| IL_3PDR_012 | 1/A/60:65, 1/A/76:81 | No text annotation | geometric IL_4QLM_002 IL_74322.1 | |
| IL_3PDR_001 | 1/X/21:22, 1/X/163:168 | No text annotation IL_29346.3 | ||
| IL_3PDR_002 | 1/X/23:26, 1/X/159:162 | No text annotation IL_41344.1 | ||
| IL_3PDR_003 | 1/X/28:31, 1/X/153:157 | Double sheared IL_03676.1 | ||
| IL_3PDR_004 | 1/X/33:36, 1/X/149:151 | Major groove platform with extra cWW IL_36931.1 | ||
| IL_3PDR_005 | 1/X/60:65, 1/X/76:81 | No text annotation IL_34822.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3PDR_010 | No text annotation | ||
| IL_3PDR_011 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3PDR_003 | 1/A/43:50, 1/A/124:126, 1/A/137:142 | No text annotation | ||
| J3_3PDR_004 | 1/A/54:56, 1/A/85:91, 1/A/115:120 | No text annotation | homologous J3_3PDR_002 J3_65990.1 | |
| J3_3PDR_001 | 1/X/43:50, 1/X/124:126, 1/X/137:142 | No text annotation J3_07703.1 | ||
| J3_3PDR_002 | 1/X/54:56, 1/X/85:91, 1/X/115:120 | No text annotation J3_65990.1 |
Problematic loops
No problematic loops
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