J3_3PIO_004

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGAG*CUUCAAAGAGUGC*GCUCAC

Length

23 nucleotides

Bulged bases

3PIO|1|X|A|1099

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIO|1|X|G|1066
3PIO|1|X|G|1067
3PIO|1|X|A|1068
3PIO|1|X|G|1069
*
3PIO|1|X|C|1091
3PIO|1|X|U|1092
3PIO|1|X|U|1093
3PIO|1|X|C|1094
3PIO|1|X|A|1095
3PIO|1|X|A|1096
3PIO|1|X|A|1097
3PIO|1|X|G|1098
3PIO|1|X|A|1099
3PIO|1|X|G|1100
3PIO|1|X|U|1101
3PIO|1|X|G|1102
3PIO|1|X|C|1103
*
3PIO|1|X|G|1110
3PIO|1|X|C|1111
3PIO|1|X|U|1112
3PIO|1|X|C|1113
3PIO|1|X|A|1114
3PIO|1|X|C|1115

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain F

50S ribosomal protein L11