J3_3PIO_007

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUG*CUAAGGUAG*CGAAAG

Length

18 nucleotides

Bulged bases

3PIO|1|X|A|1954

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIO|1|X|C|1825
3PIO|1|X|U|1826
3PIO|1|X|G|1827
*
3PIO|1|X|C|1888
3PIO|1|X|U|1909
3PIO|1|X|A|1910
3PIO|1|X|A|1911
3PIO|1|X|G|1912
3PIO|1|X|G|1913
3PIO|1|X|U|1914
3PIO|1|X|A|1915
3PIO|1|X|G|1916
*
3PIO|1|X|C|1950
3PIO|1|X|G|1951
3PIO|1|X|A|1952
3PIO|1|X|A|1953
3PIO|1|X|A|1954
3PIO|1|X|G|1955

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2