J3_3PIO_009

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCUC*GAGC*GUAGAAGG

Length

16 nucleotides

Bulged bases

3PIO|1|X|G|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIO|1|X|C|2273
3PIO|1|X|C|2274
3PIO|1|X|U|2275
3PIO|1|X|C|2276
*
3PIO|1|X|G|2300
3PIO|1|X|A|2301
3PIO|1|X|G|2302
3PIO|1|X|C|2303
*
3PIO|1|X|G|2310
3PIO|1|X|U|2311
3PIO|1|X|A|2312
3PIO|1|X|G|2313
3PIO|1|X|A|2314
3PIO|1|X|A|2315
3PIO|1|X|G|2316
3PIO|1|X|G|2317

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain L

50S ribosomal protein L18

Chain T

50S ribosomal protein L27

Chain Y

5S ribosomal RNA; 5S rRNA