J3_3PIO_015

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAGAGAACC

Length

28 nucleotides

Bulged bases

3PIO|1|X|G|514, 3PIO|1|X|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3PIO_015 not in the Motif Atlas

Homologous match to J3_7A0S_015

Geometric discrepancy: 0.1243

The information below is about J3_7A0S_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

3PIO|1|X|G|30
3PIO|1|X|C|31
*
3PIO|1|X|G|485
3PIO|1|X|U|486
3PIO|1|X|G|487
3PIO|1|X|A|488
3PIO|1|X|A|489
3PIO|1|X|A|490
3PIO|1|X|A|491
3PIO|1|X|G|492
3PIO|1|X|A|493
3PIO|1|X|A|494
3PIO|1|X|C|495
*
3PIO|1|X|G|506
3PIO|1|X|A|507
3PIO|1|X|G|508
3PIO|1|X|U|509
3PIO|1|X|G|510
3PIO|1|X|A|511
3PIO|1|X|A|512
3PIO|1|X|A|513
3PIO|1|X|G|514
3PIO|1|X|A|515
3PIO|1|X|G|516
3PIO|1|X|A|517
3PIO|1|X|A|518
3PIO|1|X|C|519
3PIO|1|X|C|520

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24