J3_3PIO_021

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

AGGGACGCA*UGCC*GAAAAGCU

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIO|1|X|A|1437
3PIO|1|X|G|1438
3PIO|1|X|G|1439
3PIO|1|X|G|1440
3PIO|1|X|A|1441
3PIO|1|X|C|1442
3PIO|1|X|G|1443
3PIO|1|X|C|1444
3PIO|1|X|A|1445
*
3PIO|1|X|U|1578
3PIO|1|X|G|1579
3PIO|1|X|C|1580
3PIO|1|X|C|1581
*
3PIO|1|X|G|1584
3PIO|1|X|A|1585
3PIO|1|X|A|1586
3PIO|1|X|A|1587
3PIO|1|X|A|1588
3PIO|1|X|G|1589
3PIO|1|X|C|1590
3PIO|1|X|U|1591

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2