J3_3PIO_022
3D structure
- PDB id
- 3PIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- UUG*CUAACC*GGGACCG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3PIO_022 not in the Motif Atlas
- Homologous match to J3_4WF9_007
- Geometric discrepancy: 0.1907
- The information below is about J3_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07703.1
- Basepair signature
- cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
3PIO|1|X|U|2074
3PIO|1|X|U|2075
3PIO|1|X|G|2076
*
3PIO|1|X|C|2179
3PIO|1|X|U|2180
3PIO|1|X|A|2181
3PIO|1|X|A|2182
3PIO|1|X|C|2183
3PIO|1|X|C|2184
*
3PIO|1|X|G|2201
3PIO|1|X|G|2202
3PIO|1|X|G|2203
3PIO|1|X|A|2204
3PIO|1|X|C|2205
3PIO|1|X|C|2206
3PIO|1|X|G|2207
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain U
- 50S ribosomal protein L28
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