J3_3PIO_026

3D structure

PDB id

3PIO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGUUC*GGAAAGUC*GUAC

Length

17 nucleotides

Bulged bases

3PIO|1|X|A|1354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIO|1|X|G|1323
3PIO|1|X|G|1324
3PIO|1|X|U|1325
3PIO|1|X|U|1326
3PIO|1|X|C|1327
*
3PIO|1|X|G|1351
3PIO|1|X|G|1352
3PIO|1|X|A|1353
3PIO|1|X|A|1354
3PIO|1|X|A|1355
3PIO|1|X|G|1356
3PIO|1|X|U|1357
3PIO|1|X|C|1358
*
3PIO|1|X|G|1617
3PIO|1|X|U|1618
3PIO|1|X|A|1619
3PIO|1|X|C|1620

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain Q

50S ribosomal protein L23

Chain V

50S ribosomal protein L29