J3_3PIO_028
3D structure
- PDB id
- 3PIO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GCC*GCUUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 3PIO|1|X|A|2367, 3PIO|1|X|U|2369, 3PIO|1|X|A|2405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3PIO_028 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1972
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
3PIO|1|X|G|2261
3PIO|1|X|C|2262
3PIO|1|X|C|2263
*
3PIO|1|X|G|2363
3PIO|1|X|C|2364
3PIO|1|X|U|2365
3PIO|1|X|U|2366
3PIO|1|X|A|2367
3PIO|1|X|G|2368
3PIO|1|X|U|2369
3PIO|1|X|G|2370
3PIO|1|X|A|2371
3PIO|1|X|A|2372
3PIO|1|X|C|2373
3PIO|1|X|C|2374
*
3PIO|1|X|G|2400
3PIO|1|X|A|2401
3PIO|1|X|U|2402
3PIO|1|X|C|2403
3PIO|1|X|A|2404
3PIO|1|X|A|2405
3PIO|1|X|C|2406
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain I
- 50S ribosomal protein L15
- Chain T
- 50S ribosomal protein L27
- Chain U
- 50S ribosomal protein L28
Coloring options: