J3_3PIP_012

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

3PIP|1|X|A|2497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3PIP_012 not in the Motif Atlas

Geometric match to J3_8VTW_008

Geometric discrepancy: 0.14

The information below is about J3_8VTW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.4

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

3PIP|1|X|C|2496
3PIP|1|X|A|2497
3PIP|1|X|U|2498
3PIP|1|X|C|2499
*
3PIP|1|X|G|2524
3PIP|1|X|U|2525
3PIP|1|X|U|2526
*
3PIP|1|X|A|2540
3PIP|1|X|U|2541
3PIP|1|X|U|2542
3PIP|1|X|A|2543
3PIP|1|X|A|2544
3PIP|1|X|A|2545
3PIP|1|X|G|2546

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14