J3_3PIP_021

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CCAG*CGAAC*GAUGAG

Length

15 nucleotides

Bulged bases

3PIP|1|X|A|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3PIP_021 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.3567

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

3PIP|1|X|C|710
3PIP|1|X|C|711
3PIP|1|X|A|712
3PIP|1|X|G|713
*
3PIP|1|X|C|745
3PIP|1|X|G|746
3PIP|1|X|A|747
3PIP|1|X|A|748
3PIP|1|X|C|749
*
3PIP|1|X|G|773
3PIP|1|X|A|774
3PIP|1|X|U|775
3PIP|1|X|G|776
3PIP|1|X|A|777
3PIP|1|X|G|778

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2