J3_3PIP_029

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CGAAG*CACCUCAGAA*UGUAG

Length

20 nucleotides

Bulged bases

3PIP|1|X|C|332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3PIP_029 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.1498

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

3PIP|1|X|C|308
3PIP|1|X|G|309
3PIP|1|X|A|310
3PIP|1|X|A|311
3PIP|1|X|G|312
*
3PIP|1|X|C|327
3PIP|1|X|A|328
3PIP|1|X|C|329
3PIP|1|X|C|330
3PIP|1|X|U|331
3PIP|1|X|C|332
3PIP|1|X|A|333
3PIP|1|X|G|334
3PIP|1|X|A|335
3PIP|1|X|A|336
*
3PIP|1|X|U|348
3PIP|1|X|G|349
3PIP|1|X|U|350
3PIP|1|X|A|351
3PIP|1|X|G|352

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain R

50S ribosomal protein L24