J3_3PIP_030

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UGAGCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

3PIP|1|X|G|699, 3PIP|1|X|G|805, 3PIP|1|X|A|806

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3PIP_030 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1567

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

11

Unit IDs

3PIP|1|X|U|696
3PIP|1|X|G|697
3PIP|1|X|A|698
3PIP|1|X|G|699
3PIP|1|X|C|700
3PIP|1|X|U|701
3PIP|1|X|A|702
*
3PIP|1|X|U|786
3PIP|1|X|A|787
3PIP|1|X|G|788
*
3PIP|1|X|C|804
3PIP|1|X|G|805
3PIP|1|X|A|806
3PIP|1|X|A|807

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2