J3_3R8N_016

3D structure

PDB id

3R8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

3R8N|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3R8N_016 not in the Motif Atlas

Geometric match to J3_6CZR_063

Geometric discrepancy: 0.2231

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

3R8N|1|A|C|990
3R8N|1|A|U|991
3R8N|1|A|U|992
3R8N|1|A|G|993
3R8N|1|A|A|994
3R8N|1|A|C|995
3R8N|1|A|A|996
3R8N|1|A|U|997
*
3R8N|1|A|A|1044
3R8N|1|A|C|1045
3R8N|1|A|A|1046
3R8N|1|A|G|1047
*
3R8N|1|A|C|1210
3R8N|1|A|U|1211
3R8N|1|A|U|1212
3R8N|1|A|A|1213
3R8N|1|A|C|1214
3R8N|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14