J3_3SUY_002

3D structure

PDB id

3SUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of THF riboswitch, unbound status

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

UAAAGUGC*GACGAAC*GG

Length

17 nucleotides

Bulged bases

3SUY|1|X|A|24||||17_555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3SUY_002 not in the Motif Atlas

Geometric match to J3_3SUX_001

Geometric discrepancy: 0.0866

The information below is about J3_3SUX_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_53439.1

Basepair signature

cWW-tSS-F-cWW-tHW-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

3SUY|1|X|U|23||||17_555
3SUY|1|X|A|24||||17_555
3SUY|1|X|A|25||||17_555
3SUY|1|X|A|26||||17_555
3SUY|1|X|G|27||||17_555
3SUY|1|X|U|28||||17_555
3SUY|1|X|G|29||||17_555
3SUY|1|X|C|30||||17_555
*
3SUY|1|X|G|56||||17_555
3SUY|1|X|A|57||||17_555
3SUY|1|X|C|58||||17_555
3SUY|1|X|G|59||||17_555
3SUY|1|X|A|60||||17_555
3SUY|1|X|A|61||||17_555
3SUY|1|X|C|62||||17_555
*
3SUY|1|X|G|73||||17_555
3SUY|1|X|G|74||||17_555

Current chains

Chain X

riboswitch

Nearby chains