J3_3T1H_003
3D structure
- PDB id
- 3T1H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.11 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3T1H_003 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.081
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
3T1H|1|A|U|920
3T1H|1|A|G|921
3T1H|1|A|G|922
3T1H|1|A|A|923
*
3T1H|1|A|U|1216
3T1H|1|A|A|1217
3T1H|1|A|C|1218
*
3T1H|1|A|G|1318
3T1H|1|A|G|1319
3T1H|1|A|A|1320
3T1H|1|A|A|1321
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S9
- Chain M
- 30S ribosomal protein S13
- Chain V
- 30S ribosomal protein Thx
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