J3_3T1H_008

3D structure

PDB id

3T1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

3T1H|1|A|A|1164

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3T1H_008 not in the Motif Atlas

Homologous match to J3_4LFB_018

Geometric discrepancy: 0.0917

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3T1H|1|A|C|1098
3T1H|1|A|G|1099
3T1H|1|A|C|1100
*
3T1H|1|A|G|1137
3T1H|1|A|G|1138
3T1H|1|A|A|1139
3T1H|1|A|C|1140
3T1H|1|A|U|1141
3T1H|1|A|G|1142
3T1H|1|A|C|1143
*
3T1H|1|A|G|1156
3T1H|1|A|A|1157
3T1H|1|A|G|1158
3T1H|1|A|G|1159
3T1H|1|A|A|1160
3T1H|1|A|A|1161
3T1H|1|A|G|1162
3T1H|1|A|G|1163
3T1H|1|A|A|1164
3T1H|1|A|G|1165

Current chains

Chain A

16s rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14 type Z