J3_3T1H_018
3D structure
- PDB id
- 3T1H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.11 Å
Loop
- Sequence
- UG*UGUU*GCAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3T1H_018 not in the Motif Atlas
- Homologous match to J3_4LFB_017
- Geometric discrepancy: 0.1703
- The information below is about J3_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_79369.1
- Basepair signature
- cWW-cWW-tSS-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
3T1H|1|A|U|1055
3T1H|1|A|G|1056
*
3T1H|1|A|U|1065
3T1H|1|A|G|1066
3T1H|1|A|U|1067
3T1H|1|A|U|1068
*
3T1H|1|A|G|1081
3T1H|1|A|C|1082
3T1H|1|A|A|1083
3T1H|1|A|A|1084
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain E
- 30S ribosomal protein S5
Coloring options: