J3_3T1Y_008
3D structure
- PDB id
- 3T1Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGC*GGAC*GGAG
- Length
- 11 nucleotides
- Bulged bases
- 3T1Y|1|A|A|1164
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3T1Y_008 not in the Motif Atlas
- Homologous match to J3_4LFB_008
- Geometric discrepancy: 0.1346
- The information below is about J3_4LFB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.5
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
3T1Y|1|A|C|1098
3T1Y|1|A|G|1099
3T1Y|1|A|C|1100
*
3T1Y|1|A|G|1137
3T1Y|1|A|G|1138
3T1Y|1|A|A|1139
3T1Y|1|A|C|1140
*
3T1Y|1|A|G|1162
3T1Y|1|A|G|1163
3T1Y|1|A|A|1164
3T1Y|1|A|G|1165
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14 type Z
Coloring options: