J3_3U5F_003

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUA*UUACG*CAAAG

Length

13 nucleotides

Bulged bases

3U5F|1|6|A|1093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5F_003 not in the Motif Atlas

Geometric match to J3_8P9A_075

Geometric discrepancy: 0.0733

The information below is about J3_8P9A_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94999.1

Basepair signature

cWW-tWW-cWW-tWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

3U5F|1|6|C|1037
3U5F|1|6|U|1038
3U5F|1|6|A|1039
*
3U5F|1|6|U|1079
3U5F|1|6|U|1080
3U5F|1|6|A|1081
3U5F|1|6|C|1082
3U5F|1|6|G|1083
*
3U5F|1|6|C|1090
3U5F|1|6|A|1091
3U5F|1|6|A|1092
3U5F|1|6|A|1093
3U5F|1|6|G|1094

Current chains

Chain 6

18S rRNA

Nearby chains