3D structure

PDB id
8P9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Methyllissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CUA*UUACG*CAAAG
Length
13 nucleotides
Bulged bases
8P9A|1|sR|A|1093
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_94999.1
Basepair signature
cWW-tWW-cWW-tWW-cWW-F-F
Number of instances in this motif group
2

Unit IDs

8P9A|1|sR|C|1037
8P9A|1|sR|U|1038
8P9A|1|sR|A|1039
*
8P9A|1|sR|U|1079
8P9A|1|sR|U|1080
8P9A|1|sR|A|1081
8P9A|1|sR|C|1082
8P9A|1|sR|G|1083
*
8P9A|1|sR|C|1090
8P9A|1|sR|A|1091
8P9A|1|sR|A|1092
8P9A|1|sR|A|1093
8P9A|1|sR|G|1094

Current chains

Chain sR
16S ribosomal RNA

Nearby chains

Chain d1
40S ribosomal protein S21-A
Chain d2
40S ribosomal protein S22-A
Chain d6
Small ribosomal subunit protein eS26B
Chain d7
40S ribosomal protein S27-A
Chain s0
40S ribosomal protein S0-A

Coloring options:

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