J3_8P9A_075

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUA*UUACG*CAAAG

Length

13 nucleotides

Bulged bases

8P9A|1|sR|A|1093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94999.1

Basepair signature

cWW-tWW-cWW-tWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

8P9A|1|sR|C|1037
8P9A|1|sR|U|1038
8P9A|1|sR|A|1039
*
8P9A|1|sR|U|1079
8P9A|1|sR|U|1080
8P9A|1|sR|A|1081
8P9A|1|sR|C|1082
8P9A|1|sR|G|1083
*
8P9A|1|sR|C|1090
8P9A|1|sR|A|1091
8P9A|1|sR|A|1092
8P9A|1|sR|A|1093
8P9A|1|sR|G|1094

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d1

40S ribosomal protein S21-A

Chain d2

40S ribosomal protein S22-A

Chain d6

Small ribosomal subunit protein eS26B

Chain d7

40S ribosomal protein S27-A

Chain s0

40S ribosomal protein S0-A