J3_3U5F_004

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5F_004 not in the Motif Atlas

Geometric match to J3_8P9A_076

Geometric discrepancy: 0.0644

The information below is about J3_8P9A_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

3U5F|1|6|C|1161
3U5F|1|6|C|1162
3U5F|1|6|A|1163
3U5F|1|6|G|1164
*
3U5F|1|6|C|1581
3U5F|1|6|U|1582
3U5F|1|6|A|1583
3U5F|1|6|G|1584
3U5F|1|6|U|1585
3U5F|1|6|A|1586
3U5F|1|6|A|1587
*
3U5F|1|6|U|1609
3U5F|1|6|G|1610
3U5F|1|6|A|1611
3U5F|1|6|U|1612
3U5F|1|6|U|1613
3U5F|1|6|A|1614
3U5F|1|6|C|1615
3U5F|1|6|G|1616

Current chains

Chain 6

18S rRNA

Nearby chains