J3_8P9A_076

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

8P9A|1|sR|C|1161
8P9A|1|sR|C|1162
8P9A|1|sR|A|1163
8P9A|1|sR|G|1164
*
8P9A|1|sR|C|1581
8P9A|1|sR|U|1582
8P9A|1|sR|A|1583
8P9A|1|sR|G|1584
8P9A|1|sR|U|1585
8P9A|1|sR|A|1586
8P9A|1|sR|A|1587
*
8P9A|1|sR|U|1609
8P9A|1|sR|G|1610
8P9A|1|sR|A|1611
8P9A|1|sR|U|1612
8P9A|1|sR|U|1613
8P9A|1|sR|A|1614
8P9A|1|sR|C|1615
8P9A|1|sR|G|1616

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain d8

40S ribosomal protein S28-A

Chain s5

40S ribosomal protein S5