J3_3U5F_005

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5F_005 not in the Motif Atlas

Geometric match to J3_8P9A_077

Geometric discrepancy: 0.0776

The information below is about J3_8P9A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3U5F|1|6|U|1168
3U5F|1|6|G|1169
3U5F|1|6|G|1170
3U5F|1|6|A|1171
*
3U5F|1|6|U|1468
3U5F|1|6|A|1469
3U5F|1|6|C|1470
*
3U5F|1|6|G|1574
3U5F|1|6|G|1575
3U5F|1|6|A|1576
3U5F|1|6|A|1577

Current chains

Chain 6

18S rRNA

Nearby chains