Motif J3_44359.2 Version J3_44359.2 of this group appears in releases 4.7 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-6 | 4-5 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4LFB_003 | 4LFB | 0.0910 | 0 | A | SSU rRNA | U | 943 | G | 944 | G | 945 | A | 946 | * | U | 1235 | A | 1236 | C | 1237 | * | G | 1337 | G | 1338 | A | 1339 | A | 1340 | cWW | tSH | cWW | cWW | cWW |
| 2 | J3_8B0X_006 | 8B0X | 0.0845 | 0 | A | SSU rRNA | U | 943 | G | 944 | G | 945 | A | 946 | * | U | 1235 | A | 1236 | C | 1237 | * | G | 1337 | G | 1338 | A | 1339 | A | 1340 | cWW | tSH | cWW | cWW | cWW |
| 3 | J3_8CRE_079 | 8CRE | 0.0801 | 0 | CM | SSU rRNA | U | 1153 | G | 1154 | G | 1155 | A | 1156 | * | U | 1454 | A | 1455 | C | 1456 | * | G | 1561 | G | 1562 | A | 1563 | A | 1564 | cWW | tSH | cWW | cWW | cWW |
| 4 | J3_8GLP_017 | 8GLP | 0.0000 | 0 | S2 | SSU rRNA | U | 1225 | G | 1226 | G | 1227 | A | 1228 | * | U | 1530 | A | 1531 | C | 1532 | * | G | 1638 | G7M | 1639 | A | 1640 | A | 1641 | cWW | tSH | cWW | cWW | cWW |
| 5 | J3_9H3G_036 | 9H3G | 0.0551 | 0 | h1 | SSU rRNA | U | 1169 | G | 1170 | G | 1171 | A | 1172 | * | U | 1471 | A | 1472 | C | 1473 | * | G | 1576 | G7M | 1577 | A | 1578 | A | 1579 | cWW | tSH | cWW | cWW | cWW |
| 6 | J3_8P9A_077 | 8P9A | 0.0823 | 0 | sR | SSU rRNA | U | 1168 | G | 1169 | G | 1170 | A | 1171 | * | U | 1468 | A | 1469 | C | 1470 | * | G | 1574 | G | 1575 | A | 1576 | A | 1577 | cWW | tSH | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGA*UAC*GGAA | 4 |
| UGGA*UAC*G(G7M)AA | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GG*A*GA | 4 |
| GG*A*(G7M)A | 2 |
Release history
| Release | 4.7 |
|---|---|
| Date | 2026-02-25 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.08 | Max 0.12
Coloring options: