J3_3U5F_010

3D structure

PDB id

3U5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 40S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

3U5F|1|6|U|1473, 3U5F|1|6|G|1539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5F_010 not in the Motif Atlas

Geometric match to J3_8P9A_084

Geometric discrepancy: 0.1234

The information below is about J3_8P9A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

3U5F|1|6|C|1470
3U5F|1|6|A|1471
3U5F|1|6|C|1472
3U5F|1|6|U|1473
3U5F|1|6|G|1474
*
3U5F|1|6|C|1533
3U5F|1|6|G|1534
3U5F|1|6|U|1535
3U5F|1|6|G|1536
3U5F|1|6|C|1537
3U5F|1|6|U|1538
3U5F|1|6|G|1539
3U5F|1|6|G|1540
*
3U5F|1|6|C|1571
3U5F|1|6|G|1572
3U5F|1|6|A|1573
3U5F|1|6|G|1574

Current chains

Chain 6

18S rRNA

Nearby chains