J3_8P9A_084

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CACUG*CGUGCUGG*CGAG

Length

17 nucleotides

Bulged bases

8P9A|1|sR|U|1473, 8P9A|1|sR|G|1539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

8P9A|1|sR|C|1470
8P9A|1|sR|A|1471
8P9A|1|sR|C|1472
8P9A|1|sR|U|1473
8P9A|1|sR|G|1474
*
8P9A|1|sR|C|1533
8P9A|1|sR|G|1534
8P9A|1|sR|U|1535
8P9A|1|sR|G|1536
8P9A|1|sR|C|1537
8P9A|1|sR|U|1538
8P9A|1|sR|G|1539
8P9A|1|sR|G|1540
*
8P9A|1|sR|C|1571
8P9A|1|sR|G|1572
8P9A|1|sR|A|1573
8P9A|1|sR|G|1574

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c8

40S ribosomal protein S18-A

Chain c9

40S ribosomal protein S19-A

Chain d5

40S ribosomal protein S25-A

Chain s5

40S ribosomal protein S5