J3_3U5H_001

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAAUUUGAAA*UAAUUUGGAG*CGAAG

Length

26 nucleotides

Bulged bases

3U5H|1|5|U|117, 3U5H|1|5|G|156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5H_001 not in the Motif Atlas

Geometric match to J3_8P9A_042

Geometric discrepancy: 0.0572

The information below is about J3_8P9A_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19664.1

Basepair signature

cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3U5H|1|5|C|113
3U5H|1|5|A|114
3U5H|1|5|A|115
3U5H|1|5|A|116
3U5H|1|5|U|117
3U5H|1|5|U|118
3U5H|1|5|U|119
3U5H|1|5|G|120
3U5H|1|5|A|121
3U5H|1|5|A|122
3U5H|1|5|A|123
*
3U5H|1|5|U|149
3U5H|1|5|A|150
3U5H|1|5|A|151
3U5H|1|5|U|152
3U5H|1|5|U|153
3U5H|1|5|U|154
3U5H|1|5|G|155
3U5H|1|5|G|156
3U5H|1|5|A|157
3U5H|1|5|G|158
*
3U5H|1|5|C|263
3U5H|1|5|G|264
3U5H|1|5|A|265
3U5H|1|5|A|266
3U5H|1|5|G|267

Current chains

Chain 5

25S rRNA

Nearby chains