J3_3U5H_003

3D structure

PDB id

3U5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution. This entry contains ribosomal RNA and ions of the 60S subunit, ribosome B

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAG*CGUAG*UCGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3U5H_003 not in the Motif Atlas

Geometric match to J3_8CRE_010

Geometric discrepancy: 0.0866

The information below is about J3_8CRE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

3U5H|1|5|U|829
3U5H|1|5|A|830
3U5H|1|5|G|831
*
3U5H|1|5|C|863
3U5H|1|5|G|864
3U5H|1|5|U|865
3U5H|1|5|A|866
3U5H|1|5|G|867
*
3U5H|1|5|U|892
3U5H|1|5|C|893
3U5H|1|5|G|894
3U5H|1|5|A|895

Current chains

Chain 5

25S rRNA

Nearby chains