J3_4A1B_001

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CAAAGUGAAAA*UAAUCUAAAG*CAAAG

Length

26 nucleotides

Bulged bases

4A1B|1|1|A|118, 4A1B|1|1|A|119, 4A1B|1|1|A|156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4A1B|1|1|C|111
4A1B|1|1|A|112
4A1B|1|1|A|113
4A1B|1|1|A|114
4A1B|1|1|G|115
4A1B|1|1|U|116
4A1B|1|1|G|117
4A1B|1|1|A|118
4A1B|1|1|A|119
4A1B|1|1|A|120
4A1B|1|1|A|121
*
4A1B|1|1|U|149
4A1B|1|1|A|150
4A1B|1|1|A|151
4A1B|1|1|U|152
4A1B|1|1|C|153
4A1B|1|1|U|154
4A1B|1|1|A|155
4A1B|1|1|A|156
4A1B|1|1|A|157
4A1B|1|1|G|158
*
4A1B|1|1|C|262
4A1B|1|1|A|263
4A1B|1|1|A|264
4A1B|1|1|A|265
4A1B|1|1|G|266

Current chains

Chain 1

26S RRNA

Nearby chains

Chain Q

60S RIBOSOMAL PROTEIN L36

Chain U

RPL13