J3_4A1B_003

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UGG*UGAGGGG*CGA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4A1B|1|1|U|547
4A1B|1|1|G|548
4A1B|1|1|G|549
*
4A1B|1|1|U|618
4A1B|1|1|G|619
4A1B|1|1|A|620
4A1B|1|1|G|621
4A1B|1|1|G|622
4A1B|1|1|G|623
4A1B|1|1|G|624
*
4A1B|1|1|C|633
4A1B|1|1|G|634
4A1B|1|1|A|635

Current chains

Chain 1

26S RRNA

Nearby chains

Chain E

RPL6

Chain H

RPL35A

Chain O

RPL28