J3_4A1B_005

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UAG*CGUAG*UCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4A1B_005 not in the Motif Atlas

Geometric match to J3_8CRE_010

Geometric discrepancy: 0.1407

The information below is about J3_8CRE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4A1B|1|1|U|854
4A1B|1|1|A|855
4A1B|1|1|G|856
*
4A1B|1|1|C|888
4A1B|1|1|G|889
4A1B|1|1|U|890
4A1B|1|1|A|891
4A1B|1|1|G|892
*
4A1B|1|1|U|917
4A1B|1|1|C|918
4A1B|1|1|A|919
4A1B|1|1|A|920

Current chains

Chain 1

26S RRNA

Nearby chains

Chain L

RPL34