J3_4A1B_009

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UAGAG*CAAAGAAAC*GGGAGACAUAA

Length

25 nucleotides

Bulged bases

4A1B|1|1|A|1666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4A1B|1|1|U|1652
4A1B|1|1|A|1653
4A1B|1|1|G|1654
4A1B|1|1|A|1655
4A1B|1|1|G|1656
*
4A1B|1|1|C|1665
4A1B|1|1|A|1666
4A1B|1|1|A|1667
4A1B|1|1|A|1668
4A1B|1|1|G|1669
4A1B|1|1|A|1670
4A1B|1|1|A|1671
4A1B|1|1|A|1672
4A1B|1|1|C|1673
*
4A1B|1|1|G|1832
4A1B|1|1|G|1833
4A1B|1|1|G|1834
4A1B|1|1|A|1835
4A1B|1|1|G|1836
4A1B|1|1|A|1837
4A1B|1|1|C|1838
4A1B|1|1|A|1839
4A1B|1|1|U|1840
4A1B|1|1|A|1841
4A1B|1|1|A|1842

Current chains

Chain 1

26S RRNA

Nearby chains

Chain L

RPL34

Chain N

RPL27

Chain P

RPL38