3D structure

PDB id
4A1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
AGAC*GUUCUAAAGUUAAG*UGAU
Length
22 nucleotides
Bulged bases
4A1B|1|1|U|2541, 4A1B|1|1|U|2542, 4A1B|1|1|A|2545, 4A1B|1|1|U|2549, 4A1B|1|1|U|2550
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4A1B|1|1|A|2524
4A1B|1|1|G|2525
4A1B|1|1|A|2526
4A1B|1|1|C|2527
*
4A1B|1|1|G|2540
4A1B|1|1|U|2541
4A1B|1|1|U|2542
4A1B|1|1|C|2543
4A1B|1|1|U|2544
4A1B|1|1|A|2545
4A1B|1|1|A|2546
4A1B|1|1|A|2547
4A1B|1|1|G|2548
4A1B|1|1|U|2549
4A1B|1|1|U|2550
4A1B|1|1|A|2551
4A1B|1|1|A|2552
4A1B|1|1|G|2553
*
4A1B|1|1|U|2567
4A1B|1|1|G|2568
4A1B|1|1|A|2569
4A1B|1|1|U|2570

Current chains

Chain 1
26S RRNA

Nearby chains

Chain G
RPL30
Chain L
RPL34
Chain N
RPL27

Coloring options:

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