J3_4A2I_005

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

4A2I|1|A|U|1212, 4A2I|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4A2I_005 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.2549

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4A2I|1|A|C|990
4A2I|1|A|U|991
4A2I|1|A|U|992
4A2I|1|A|G|993
*
4A2I|1|A|C|1045
4A2I|1|A|A|1046
4A2I|1|A|G|1047
*
4A2I|1|A|C|1210
4A2I|1|A|U|1211
4A2I|1|A|U|1212
4A2I|1|A|A|1213
4A2I|1|A|C|1214
4A2I|1|A|G|1215

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

30S RIBOSOMAL PROTEIN S14