J3_4A2I_010

3D structure

PDB id

4A2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron Microscopy Structure of the 30S Subunit in Complex with the YjeQ Biogenesis Factor

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4A2I_010 not in the Motif Atlas

Geometric match to J3_5J7L_001

Geometric discrepancy: 0.088

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4A2I|1|A|G|46
4A2I|1|A|C|47
*
4A2I|1|A|G|361
4A2I|1|A|G|362
4A2I|1|A|A|363
4A2I|1|A|A|364
4A2I|1|A|U|365
4A2I|1|A|A|366
4A2I|1|A|U|367
*
4A2I|1|A|A|393
4A2I|1|A|G|394
4A2I|1|A|C|395

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain L

30S RIBOSOMAL PROTEIN S12

Chain P

30S RIBOSOMAL PROTEIN S16