J3_4ADV_016

3D structure

PDB id

4ADV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4ADV|1|A|U|1212, 4ADV|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4ADV_016 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.2006

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4ADV|1|A|C|990
4ADV|1|A|U|991
4ADV|1|A|U|992
4ADV|1|A|G|993
4ADV|1|A|A|994
4ADV|1|A|C|995
4ADV|1|A|A|996
4ADV|1|A|U|997
*
4ADV|1|A|A|1044
4ADV|1|A|C|1045
4ADV|1|A|A|1046
4ADV|1|A|G|1047
*
4ADV|1|A|C|1210
4ADV|1|A|U|1211
4ADV|1|A|U|1212
4ADV|1|A|A|1213
4ADV|1|A|C|1214
4ADV|1|A|G|1215

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

30S RIBOSOMAL PROTEIN S14