J3_4BPP_004
3D structure
- PDB id
- 4BPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 4
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUAUG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4BPP_004 not in the Motif Atlas
- Geometric match to J3_8CRE_078
- Geometric discrepancy: 0.149
- The information below is about J3_8CRE_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
4BPP|1|A|C|1133
4BPP|1|A|C|1134
4BPP|1|A|A|1135
4BPP|1|A|G|1136
*
4BPP|1|A|C|1553
4BPP|1|A|U|1554
4BPP|1|A|A|1555
4BPP|1|A|G|1556
4BPP|1|A|U|1557
4BPP|1|A|A|1558
4BPP|1|A|A|1559
*
4BPP|1|A|U|1581
4BPP|1|A|G|1582
4BPP|1|A|A|1583
4BPP|1|A|U|1584
4BPP|1|A|U|1585
4BPP|1|A|A|1586
4BPP|1|A|U|1587
4BPP|1|A|G|1588
Current chains
- Chain A
- 18S RRNA
Nearby chains
- Chain 1
- 40S RIBOSOMAL PROTEIN RPS28E
- Chain G
- 40S RIBOSOMAL PROTEIN RPS5E
- Chain I
- 40S RIBOSOMAL PROTEIN RPS16E
Coloring options: