J3_4BPP_006
3D structure
- PDB id
- 4BPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 4
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 4BPP|1|A|G|1171, 4BPP|1|A|G|1173, 4BPP|1|A|A|1175
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4BPP_006 not in the Motif Atlas
- Geometric match to J3_8CRE_080
- Geometric discrepancy: 0.1187
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4BPP|1|A|C|1152
4BPP|1|A|U|1153
4BPP|1|A|U|1154
4BPP|1|A|A|1155
4BPP|1|A|A|1156
4BPP|1|A|U|1157
4BPP|1|A|U|1158
4BPP|1|A|U|1159
*
4BPP|1|A|G|1170
4BPP|1|A|G|1171
4BPP|1|A|G|1172
4BPP|1|A|G|1173
4BPP|1|A|A|1174
4BPP|1|A|A|1175
4BPP|1|A|A|1176
4BPP|1|A|C|1177
4BPP|1|A|U|1178
4BPP|1|A|C|1179
4BPP|1|A|A|1180
4BPP|1|A|C|1181
*
4BPP|1|A|G|1425
4BPP|1|A|G|1426
4BPP|1|A|C|1427
4BPP|1|A|C|1428
4BPP|1|A|G|1429
Current chains
- Chain A
- 18S RRNA
Nearby chains
- Chain 9
- 40S RIBOSOMAL PROTEIN RPS31E
- Chain J
- 40S RIBOSOMAL PROTEIN RPS20E
- Chain M
- 40S RIBOSOMAL PROTEIN RPS18E
- Chain N
- 40S RIBOSOMAL PROTEIN RPS29E
- Chain S
- 40S RIBOSOMAL PROTEIN RPS15E
Coloring options: