3D structure

PDB id
8CRE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CUUAAUUU*GGGGAAACUCAC*GGCCG
Length
25 nucleotides
Bulged bases
8CRE|1|CM|G|1184, 8CRE|1|CM|G|1186, 8CRE|1|CM|A|1188
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8CRE|1|CM|C|1165
8CRE|1|CM|U|1166
8CRE|1|CM|U|1167
8CRE|1|CM|A|1168
8CRE|1|CM|A|1169
8CRE|1|CM|U|1170
8CRE|1|CM|U|1171
8CRE|1|CM|U|1172
*
8CRE|1|CM|G|1183
8CRE|1|CM|G|1184
8CRE|1|CM|G|1185
8CRE|1|CM|G|1186
8CRE|1|CM|A|1187
8CRE|1|CM|A|1188
8CRE|1|CM|A|1189
8CRE|1|CM|C|1190
8CRE|1|CM|U|1191
8CRE|1|CM|C|1192
8CRE|1|CM|A|1193
8CRE|1|CM|C|1194
*
8CRE|1|CM|G|1440
8CRE|1|CM|G|1441
8CRE|1|CM|C|1442
8CRE|1|CM|C|1443
8CRE|1|CM|G|1444

Current chains

Chain CM
18S

Nearby chains

Chain CL
60S ribosomal protein CAALFM_C304810CA
Chain DC
40S ribosomal protein S15
Chain DF
40S ribosomal protein S18-B
Chain DH
Ribosomal protein S10
Chain DQ
40S ribosomal protein S29A
Chain DS
Ubiquitin-40S ribosomal protein S31 fusion protein

Coloring options:

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